Murasaki\u672c\u4f53<\/a>\u3068\u3001 \u305d\u306e\u53ef\u8996\u5316\u30c4\u30fc\u30eb\u3067\u3042\u308b\u00a0GMV<\/a>\u306f\u3001 \u305d\u308c\u305e\u308c\u30aa\u30ea\u30b8\u30ca\u30eb\u306e\u958b\u767a\u5143\u3067\u3042\u308b\u3001\u00a0\u6176\u61c9\u7fa9\u587e\u5927\u5b66\u7406\u5de5\u5b66\u90e8 \u698a\u539f\u7814\u7a76\u5ba4<\/a>\u00a0\u306e\u30a6\u30a7\u30d6\u30b5\u30a4\u30c8\u304b\u3089\u5165\u624b\u304c\u53ef\u80fd\u3067\u3059\uff08\u3067\u3057\u305f\uff09\u304c\u3001\u95a2\u4fc2\u8005\u304c\u5352\u696d\u3057\u305f\u308a\u3001 GMV \u306e\u30b3\u30fc\u30c9\u3092\u66f8\u3044\u3066\u3044\u305f\u50d5\u3082\u7570\u52d5\u3057\u3066\u3057\u307e\u3044\u307e\u3057\u305f\u306e\u3067\u3001 \u30c0\u30a6\u30f3\u30ed\u30fc\u30c9\u3059\u308b\u3060\u3051\u3067\u4f7f\u3046\u3053\u3068\u306e\u3067\u304d\u308bMac \u7528\u306e\u30d0\u30a4\u30ca\u30ea\u306f\u3001 \u50d5\u306e\u7814\u7a76\u5ba4\u306e\u00a0\u30d7\u30ed\u30b8\u30a7\u30af\u30c8 > \u751f\u547d\u79d1\u5b66<\/a>\u00a0\u306e\u30da\u30fc\u30b8\u3067\u914d\u5e03\u3092\u7d99\u7d9a\u3057\u3066\u3044\u307e\u3059\u3002\u73fe\u5728\u914d\u5e03\u4e2d\u306e Murasaki \u3068 GMV \u306f\u3069\u3061\u3089\u3082\u3001MacOS X 10.8 \u4ee5\u964d\u3067\u52d5\u4f5c\u3059\u308b\u3088\u3046\u306b\u306a\u3063\u3066\u3044\u307e\u3059\u3002<\/p>\n\n\n\n \u7570\u306a\u308b\u751f\u7269\u7a2e\u306e\u30b2\u30ce\u30e0\u3092\u6bd4\u3079\u308b\u3068\u3001\u53f3\u306e\u56f3\u306e\u3088\u3046\u306b\u3001 \u3042\u308b\u9818\u57df\u306f\u91cd\u8907\u3057\u305f\u308a (\u91cd\u8907)\u3001 \u3042\u308b\u3044\u306f\u4ed6\u306e\u9818\u57df\u3068\u9806\u5e8f\u304c\u5165\u308c\u66ff\u308f\u3063\u305f\u308a (\u8ee2\u79fb)\u3001DNA \u306e\u3082\u3046\u4e00\u65b9\u306e\u9396\u306b\u79fb\u52d5\u3057\u305f\u308a (\u9006\u4f4d)\u3001 \u3082\u3068\u3082\u3068\u306e\u30b2\u30ce\u30e0\u306b\u306f\u306a\u304b\u3063\u305f\u914d\u5217\u304c\u633f\u5165\u3055\u308c\u305f\u308a\u3001 \u6b20\u5931\u3057\u305f\u308a\u3057\u3066\u3044\u308b\u3053\u3068\u304c\u3042\u308a\u307e\u3059\u3002<\/p>\n\n\n\n \u3053\u308c\u3089\u306f\u30b2\u30ce\u30e0\u518d\u7de8\u6210\u3068\u3088\u3070\u308c\u3001 \u907a\u4f1d\u5b50\u306e\u6c34\u8fba\u4f1d\u64ad\u3084\u76f8\u540c\u7d44\u307f\u63db\u3048\u3084\u3001\u30c8\u30e9\u30f3\u30b9\u30dd\u30be\u30f3\u306a\u3069\u3001 \u3055\u307e\u3056\u307e\u306e\u8981\u56e0\u306b\u3088\u3063\u3066\u8d77\u3053\u308a\u307e\u3059\u3002 \u4f55\u3089\u304b\u306e\u7406\u7531\u306b\u3088\u308a\u983b\u7e41\u306b\u518d\u7de8\u6210\u304c\u8d77\u304d\u308b\u751f\u7269\u306e\u30b0\u30eb\u30fc\u30d7\u3082\u3042\u308c\u3070\u3001 \u305d\u3046\u3067\u306a\u3044\u30b0\u30eb\u30fc\u30d7\u3082\u3042\u308a\u307e\u3059\u3002<\/p>\n\n\n\n \u7a2e\u9593\u3084\u682a\u9593\u3067\u30b2\u30ce\u30e0\u5168\u4f53\u306e\u518d\u7de8\u6210\u3092\u6349\u3048\u308b\u3053\u3068\u306f\u3001 \u305d\u306e\u9593\u306e\u9032\u5316\u7684\u95a2\u4fc2\u3092\u77e5\u308b\u3053\u3068\u306b\u306a\u308a\u307e\u3059\u3002\u3057\u304b\u3057\u3001 \u30b2\u30ce\u30e0\u5168\u4f53\u3068\u3044\u3046\u5927\u304d\u306a\u30b9\u30b1\u30fc\u30eb\u3067\u3001 \u306a\u304a\u304b\u3064\u4f55\u7a2e\u985e\u3082\u306e\u30b2\u30ce\u30e0\u306e\u9593\u306e\u95a2\u4fc2\u3092\u6c42\u3081\u308b\u3053\u3068\u306f\u3001 \u5f93\u6765\u5e83\u304f\u7528\u3044\u3089\u308c\u3066\u3044\u308b\u914d\u5217\u6bd4\u8f03\u306e\u305f\u3081\u306e\u30c4\u30fc\u30eb\u3067\u306f\u3001 \u8a08\u7b97\u6642\u9593\u3084\u5fc5\u8981\u30e1\u30e2\u30ea\u306a\u3069\u306e\u9762\u3067\u73fe\u5b9f\u7684\u3067\u306f\u3042\u308a\u307e\u305b\u3093\u3067\u3057\u305f\u3002<\/p>\n\n\n\n Murasaki \u3067\u306f\u3001 \u4ee5\u4e0b\u306e\u3044\u304f\u3064\u304b\u306e\u30bb\u30af\u30b7\u30e7\u30f3\u3067\u8aac\u660e\u3059\u308b\u3088\u3046\u306a\u30a2\u30a4\u30c7\u30a2\u3092\u5c0e\u5165\u3057\u3001 \u30b2\u30ce\u30e0\u30ef\u30a4\u30c9\u306e\u518d\u7de8\u6210\u3092\u9ad8\u901f\u306b\u8a08\u7b97\u3059\u308b\u3053\u3068\u304c\u3067\u304d\u307e\u3059\u3002<\/p>\n\n\n\n Murasaki \u3067\u30b2\u30ce\u30e0\u9593\u306e\u95a2\u4fc2\u3092\u8abf\u3079\u308b\u969b\u306b\u306f\u3001 \u300c\u30b7\u30fc\u30c9\u30d1\u30bf\u30fc\u30f3 (\u3042\u308b\u3044\u306f\u5358\u306b\u3001\u30d1\u30bf\u30fc\u30f3)\u300d\u3068\u547c\u3070\u308c\u308b 1 \u3068 0 \u3067\u69cb\u6210\u3055\u308c\u305f\u6587\u5b57\u5217\u3092\u6307\u5b9a\u3057\u307e\u3059\u3002\u305f\u3068\u3048\u3070\u3001\u53f3\u306e\u56f3\u3067\u306f\u3001 2\u672c\u306e\u77ed\u3044\u914d\u5217\u306b\u5bfe\u3057\u3066\u3001”110111011″ \u3068\u3044\u3046\u9577\u3055 9 \u306e\u30d1\u30bf\u30fc\u30f3\u3092\u4e0e\u3048\u3066\u3044\u307e\u3059\u3002<\/p>\n\n\n\n \u3053\u308c\u306f\u30012\u672c\u306e\u914d\u5217\u306e\u4efb\u610f\u306e9\u5869\u57fa\u306e\u90e8\u5206\u914d\u5217\u3069\u3046\u3057\u3092\u6bd4\u3079\u308b\u969b\u306e\u3001 match \/ mismatch \u306e\u5224\u5b9a\u306b\u4f7f\u308f\u308c\u307e\u3059\u3002 9\u5869\u57fa\u306e\u90e8\u5206\u914d\u5217\u3069\u3046\u3057\u3092\u6bd4\u8f03\u3059\u308b\u969b\u306b\u3001\u30d1\u30bf\u30fc\u30f3\u304c “1” \u306b\u306a\u3063\u3066\u3044\u308b\u4f4d\u7f6e\u3067\u306f mismatch \u3092\u8a31\u5bb9\u305b\u305a\u3001 “0” \u306b\u306a\u3063\u3066\u3044\u308b\u4f4d\u7f6e\u3067\u306e mismatch \u3060\u3051\u3067\u3042\u308c\u3070\u90e8\u5206\u914d\u5217\u5168\u4f53\u3068\u3057\u3066\u306f match \u3068\u3059\u308b\u3001\u3068\u3044\u3046\u30eb\u30fc\u30eb\u3067\u3059\u3002<\/p>\n\n\n\n \u53f3\u56f3\u306e\u4f8b\u3067\u306f\u300110\u5869\u57fa\u306e\u914d\u5217\u306e\u4e2d\u306b3\u5869\u57fa\u306e\u5909\u7570\u304c\u3042\u308a\u307e\u3059\u304c\u3001 \u3053\u306e\u30eb\u30fc\u30eb\u3068\u4e0e\u3048\u305f\u30d1\u30bf\u30fc\u30f3\u306b\u3088\u308a\u3001\u5de6\u5074\u306e9\u5869\u57fa\u3069\u3046\u3057\u306f match\u3001 \u53f3\u5074\u306e 9 \u5869\u57fa\u3069\u3046\u3057\u306f mismatch \u3068\u5224\u65ad\u3057\u307e\u3059\u3002<\/p>\n\n\n\n \u3053\u306e\u3088\u3046\u306b\u3001\u30b7\u30fc\u30c9\u30d1\u30bf\u30fc\u30f3\u306e\u9577\u3055\u3068\u3001 \u305d\u3053\u306b\u542b\u307e\u308c\u308b 0 \u306e\u4f4d\u7f6e\u3084\u6570\u3067\u3001 \u3069\u306e\u304f\u3089\u3044\u53b3\u5bc6\u306b\u90e8\u5206\u914d\u5217\u9593\u306e\u30de\u30c3\u30c1\u3092\u884c\u3046\u304b\u3092\u30b3\u30f3\u30c8\u30ed\u30fc\u30eb\u3067\u304d\u307e\u3059\u3002 \u57fa\u672c\u7684\u306b\u306f\u30b7\u30fc\u30c9\u30d1\u30bf\u30fc\u30f3\u304c\u9577\u304f\u306a\u308b\u307b\u3069\u3001 \u542b\u307e\u308c\u308b 0 \u306e\u5272\u5408\u304c\u5c11\u306a\u304f\u306a\u308b\u307b\u3069\u914d\u5217\u306e\u6bd4\u8f03\u306f\u53b3\u5bc6\u306b\u306a\u308a\u307e\u3059\u3002<\/p>\n\n\n\n \u307e\u305f\u3001\u30b7\u30fc\u30c9\u30d1\u30bf\u30fc\u30f3\u306b\u542b\u307e\u308c\u308b 1 \u306e\u6570\u3092\u3001 \u305d\u306e\u30d1\u30bf\u30fc\u30f3\u306e\u300c\u91cd\u3055 (weight)\u300d\u3068\u547c\u3093\u3067\u3044\u307e\u3059\u3002<\/p>\n\n\n\n \u4e0a\u3067\u8ff0\u3079\u305f\u3088\u3046\u306b\u3001\u5bfe\u8c61\u306e\u914d\u5217\u9593\u3067\u3001 \u30b7\u30fc\u30c9\u30d1\u30bf\u30fc\u30f3\u306e\u9577\u3055\u306e\u90e8\u5206\u914d\u5217 (seed) \u306b\u3064\u3044\u3066 match, mismatch \u3092\u5224\u5b9a\u3057\u3001 (\u5bfe\u8c61\u306e\u914d\u5217\u304c3\u672c\u4ee5\u4e0a\u3042\u308b\u5834\u5408\u3067\u3082) \u3059\u3079\u3066\u306e\u914d\u5217\u3067 match \u3068\u306a\u3063\u305f\u5834\u5408\u306b\u306f\u3001\u53f3\u56f3\u306e\u4e0a\u306e\u3088\u3046\u306b\u300c\u30a2\u30f3\u30ab\u30fc (anchor)\u300d \u3068\u3088\u3070\u308c\u308b\u7dda\u304c\u5f15\u304b\u308c\u307e\u3059\u30022\u3064\u4ee5\u4e0a\u306e\u30a2\u30f3\u30ab\u30fc\u304c\u540c\u3058\u65b9\u5411\u3067\u3001 \u304b\u3064\u91cd\u306a\u308b\u30fb\u3042\u308b\u3044\u306f\u9023\u7d9a\u3057\u3066\u3044\u305f\u5834\u5408\u3001\u53f3\u56f3\u306e\u4e0b\u306e\u3088\u3046\u306b\u3001 \u304a\u4e92\u3044\u306b\u7d50\u5408\u3055\u308c\u3001\u3072\u3068\u3064\u306e\u9577\u3044\u30a2\u30f3\u30ab\u30fc\u3068\u306a\u308a\u307e\u3059\u3002<\/p>\n\n\n\n \u30a2\u30f3\u30ab\u30fc\u306e\u9577\u3055\u306f\u3001\u6700\u77ed\u3067\u30b7\u30fc\u30c9\u30d1\u30bf\u30fc\u30f3\u306e\u9577\u3055\u3001 \u6700\u9577\u3067\u5165\u529b\u3068\u3057\u3066\u4e0e\u3048\u3089\u308c\u305f\u914d\u5217\u306e\u5168\u9577\u306b\u306a\u308a\u307e\u3059 (\u307e\u3063\u305f\u304f\u540c\u3058\u914d\u5217\u30922\u672c\u4e0e\u3048\u308c\u3070\u3001 \u914d\u5217\u5168\u4f53\u304c\u3072\u3068\u3064\u306e\u30a2\u30f3\u30ab\u30fc\u3067\u30ab\u30d0\u30fc\u3055\u308c\u307e\u3059\u3002)<\/p>\n\n\n\n \u30a2\u30f3\u30ab\u30fc\u304c\u5f15\u304b\u308c\u305f\u9818\u57df\u306f\u57fa\u672c\u7684\u306b\u3001\u3042\u308b\u7a0b\u5ea6\u306e\u76f8\u540c\u6027\u306e\u3042\u308b\u3001 \u4fdd\u5b58\u9818\u57df\u3067\u3059\u3002\u3053\u308c\u306f\u3044\u304f\u3064\u3082\u306e\u907a\u4f1d\u5b50\u3092\u542b\u3080 \u300c\u30b7\u30f3\u30c6\u30cb\u30fc\u300d\u3068\u547c\u3070\u308c\u308b\u9577\u3055\u306b\u306a\u308b\u3053\u3068\u3082\u3042\u308c\u3070\u3001 \u3072\u3068\u3064\u306e\u907a\u4f1d\u5b50\u7a0b\u5ea6\u306e\u9577\u3055\u3067\u3042\u3063\u305f\u308a\u3001 \u3042\u308b\u3044\u306f\u907a\u4f1d\u5b50\u306e\u7279\u5b9a\u306e\u30c9\u30e1\u30a4\u30f3\u3084\u30b3\u30fc\u30c7\u30a3\u30f3\u30b0\u9818\u57df\u7a0b\u5ea6\u306e\u9577\u3055\u306b\u306a\u308b\u3053\u3068\u3082\u3042\u308a\u307e\u3059\u3002 \u3053\u308c\u306f\u3001\u914d\u5217\u306e\u76f8\u540c\u6027\u304c\u3069\u306e\u7a0b\u5ea6\u3042\u308b\u304b\u3001\u3068\u3044\u3046\u3053\u3068\u3084\u3001 \u4e0e\u3048\u308b\u30b7\u30fc\u30c9\u30d1\u30bf\u30fc\u30f3\u306e\u9577\u3055\u3084\u91cd\u3055\u306b\u3082\u3088\u3063\u3066\u5909\u308f\u3063\u3066\u304d\u307e\u3059\u3002<\/p>\n\n\n\n Murasaki \u3067\u306f\u3001\u30b7\u30fc\u30c9\u30d1\u30bf\u30fc\u30f3\u3092\u7528\u3044\u3066\u3001 \u4e0e\u3048\u3089\u308c\u305f\u914d\u5217\u5168\u3066\u306b\u5171\u901a\u306b\u5b58\u5728\u3059\u308b\u90e8\u5206\u914d\u5217\u3092\u691c\u51fa\u3057\u307e\u3059\u304c\u3001 \u3053\u306e\u969b\u306b\u3001\u3042\u308b\u90e8\u5206\u914d\u5217\u304c\u914d\u5217\u4e2d\u306b\u51fa\u73fe\u3059\u308b\u983b\u5ea6\u306f\u3001 \u90e8\u5206\u914d\u5217\u306b\u3088\u3063\u3066\u7570\u306a\u308a\u307e\u3059\u3002<\/p>\n\n\n\n \u305f\u3068\u3048\u3070\u3001 \u30ea\u30d4\u30fc\u30c8\u914d\u5217\u306e\u3088\u3046\u306b\u30b2\u30ce\u30e0\u914d\u5217\u4e2d\u306b\u591a\u6570\u306e\u30b3\u30d4\u30fc\u304c\u5b58\u5728\u3059\u308b\u914d\u5217\u3084\u3001 \u305d\u306e\u9006\u306b\u3001\u7279\u5b9a\u306e\u907a\u4f1d\u5b50\u306b\u56fa\u6709\u306e\u914d\u5217\u3067\u3042\u308c\u3070\u3001 1\u5ea6\u3057\u304b\u30b2\u30ce\u30e0\u4e2d\u306b\u51fa\u3066\u304d\u307e\u305b\u3093\u3002<\/p>\n\n\n\n \u30b2\u30ce\u30e0\u9593\u306e\u9032\u5316\u7684\u306a\u95a2\u4fc2\u3092\u8aad\u307f\u89e3\u304f\u4e0a\u3067\u306f\u591a\u304f\u306e\u5834\u5408\u3001 \u591a\u6570\u306e\u30b3\u30d4\u30fc\u304c\u5b58\u5728\u3059\u308b\u90e8\u5206\u914d\u5217\u3088\u308a\u3082\u3001 \u30b3\u30d4\u30fc\u6570\u306e\u5c11\u306a\u3044\u90e8\u5206\u914d\u5217\u306b\u7740\u76ee\u3059\u308b\u3053\u3068\u304c\u591a\u3044\u3067\u3057\u3087\u3046\u3002 \u305d\u3053\u3067\u3001Murasaki \u3067\u306f tf-idf (term frequency – inverse document frequency) \u3068\u3088\u3070\u308c\u308b\u624b\u6cd5\u3067\u3001 \u30a2\u30f3\u30ab\u30fc\u306e\u30b9\u30b3\u30a2\u4ed8\u3051\u3092\u884c\u3063\u3066\u3044\u307e\u3059\u3002<\/p>\n\n\n\n \u3053\u308c\u306f\u3001\u81ea\u7136\u8a00\u8a9e\u51e6\u7406\u3067\u3001 \u6587\u66f8\u3092\u7279\u5fb4\u4ed8\u3051\u308b\u5358\u8a9e\u3092\u30b9\u30b3\u30a2\u3065\u3051\u3059\u308b\u306e\u306b\u7528\u3044\u3089\u308c\u308b\u57fa\u672c\u7684\u306a\u624b\u6cd5\u3067\u3001 \u3042\u308b\u5358\u8a9e\u304c\u7279\u5b9a\u306e\u6587\u66f8\u306b\u51fa\u3066\u304f\u308b\u56de\u6570 (tf: term frequency) \u306b\u3001 \u305d\u306e\u5358\u8a9e\u3092\u542b\u3080\u6587\u66f8\u306e\u6570\u306e\u9006\u6570 (idf: inverse document frequency) \u3092\u304b\u3051\u3066\u7b97\u51fa\u3057\u307e\u3059\u3002<\/p>\n\n\n\n Murasaki \u3067\u306f\u3001seed \u3092\u5358\u8a9e\u3068\u3057\u3066\u6570\u3048\u3001\u30a2\u30f3\u30ab\u30fc\u3092\u30b9\u30b3\u30a2\u4ed8\u3051\u3057\u307e\u3059\u3002 \u53f3\u306e\u56f3\u306f\u3001Murasaki \u306e\u7d50\u679c\u3092 tf-idf \u30b9\u30b3\u30a2\u306e\u4e0b\u9650\u5024\u3067\u30d5\u30a3\u30eb\u30bf\u3057\u3066\u4e26\u3079\u305f\u3082\u306e\u3067\u3001 \u30d5\u30a3\u30eb\u30bf\u306e\u4e0b\u9650\u5024\u3092\u5f15\u304d\u4e0a\u3052\u308b\u306b\u3064\u308c\u3066\u3068\u3001 \u30b2\u30ce\u30e0\u9593\u3067\u4fdd\u5b58\u3055\u308c\u3066\u3044\u308b\u300c\u9aa8\u683c\u300d \u304c\u6d6e\u304b\u3073\u4e0a\u304c\u3063\u3066\u304f\u308b\u3053\u3068\u304c\u308f\u304b\u308a\u307e\u3059\u3002<\/p>\n\n\n\n Murasaki \u306f\u30b2\u30ce\u30e0\u914d\u5217\u5168\u4f53\u3092\u30bf\u30fc\u30b2\u30c3\u30c8\u3068\u3057\u3066\u3001 \u4fdd\u5b58\u3055\u308c\u3066\u3044\u308b\u914d\u5217\u306e\u691c\u51fa\u3092\u884c\u3044\u307e\u3059\u304c\u3001 \u6bd4\u8f03\u3059\u308b\u30b2\u30ce\u30e0\u9593\u306b\u5171\u901a\u306e\u30ea\u30d4\u30fc\u30c8\u914d\u5217\u304c\u5b58\u5728\u3059\u308b\u3068\u3001 \u7d44\u307f\u5408\u308f\u305b\u304c\u7206\u767a\u3059\u308b\u3053\u3068\u304c\u3042\u308a\u307e\u3059\u3002 \u5f93\u6765\u306f\u3053\u3046\u3044\u3063\u305f\u554f\u984c\u3092\u56de\u907f\u3059\u308b\u305f\u3081\u306b RepeatMasker<\/a> \u306a\u3069\u3092\u4f7f\u3063\u3066\u30ea\u30d4\u30fc\u30c8\u914d\u5217\u3092\u30de\u30b9\u30af\u3057\u3066\u304a\u304f\u5fc5\u8981\u304c\u3042\u308a\u307e\u3057\u305f\u3002<\/p>\n\n\n\n Murasaki \u3067\u306f\u3001\u7279\u5b9a\u306e seed \u306e\u7d44\u307f\u5408\u308f\u305b\u304c\u95be\u5024\u3092\u8d85\u3048\u3066\u591a\u304f\u306a\u308b\u5834\u5408\u306b\u3001mergefilter \u3068\u3044\u3046\u6a5f\u80fd\u3092\u4f7f\u3046\u3053\u3068\u3067\u3001 \u30a2\u30f3\u30ab\u30fc\u306e\u69cb\u6210\u8981\u7d20\u304b\u3089\u9664\u5916\u3059\u308b\u3053\u3068\u304c\u3067\u304d\u307e\u3059\u3002 \u3053\u308c\u306b\u3088\u308a\u3001\u4e8b\u524d\u306b\u30ea\u30d4\u30fc\u30c8\u914d\u5217\u306b\u95a2\u3057\u3066\u691c\u8a0e\u3092\u884c\u308f\u306a\u304f\u3066\u3082\u3001 \u5168\u30b2\u30ce\u30e0\u3067\u306e\u6bd4\u8f03\u3092\u9ad8\u901f\u306b\u5b9f\u884c\u53ef\u80fd\u3067\u3059<\/p>\n\n\n\n \u3053\u3053\u3067\u306f\u3001MacOS X (10.8 \u4ee5\u964d) \u3067 Murasaki \u3092\u5b9f\u884c\u3057\u3001 GMV \u3092\u7528\u3044\u3066 2 \u672c\u306e\u30b2\u30ce\u30e0\u9593\u306e\u30a2\u30e9\u30a4\u30e1\u30f3\u30c8\u3092\u4fef\u77b0\u3059\u308b\u3068\u3053\u308d\u307e\u3067\u3092\u89e3\u8aac\u3057\u307e\u3059\u3002<\/p>\n\n\n\n Murasaki \u3068 GMV \u306f\u3069\u3061\u3089\u3082\u3053\u306e\u30a6\u30a7\u30d6\u30b5\u30a4\u30c8\u306e\u3001 \u30d7\u30ed\u30b8\u30a7\u30af\u30c8 > \u751f\u547d\u79d1\u5b66<\/a> \u306e\u30da\u30fc\u30b8\u304b\u3089\u624b\u306b\u5165\u308c\u308b\u3053\u3068\u304c\u3067\u304d\u307e\u3059\u3002Murasaki \u672c\u4f53\u306f\u5b9f\u884c\u30d5\u30a1\u30a4\u30eb\u304c\u3072\u3068\u3064\u3060\u3051\u3067\u3001 \u30b3\u30de\u30f3\u30c9\u30e9\u30a4\u30f3\u304b\u3089\u5b9f\u884c\u3057\u307e\u3059\u306e\u3067\u3001zip \u30d5\u30a1\u30a4\u30eb\u3092\u5c55\u958b\u3057\u3066\u3067\u304d\u308b murasaki \u3068\u3044\u3046\u5b9f\u884c\u30d5\u30a1\u30a4\u30eb\u3092\u3069\u3053\u304b\u597d\u304d\u306a\u30d5\u30a9\u30eb\u30c0\u306b\u7f6e\u3044\u3066\u304a\u304d\u307e\u3057\u3087\u3046 (\u3053\u3053\u3067\u306f ~\/bin\/murasaki \u3068\u3057\u307e\u3059)\u3002 GMV \u306f GUI \u306e\u30a2\u30d7\u30ea\u30b1\u30fc\u30b7\u30e7\u30f3\u3067\u3059\u306e\u3067\u3001 \u3053\u308c\u306f\u30c7\u30b9\u30af\u30c8\u30c3\u30d7\u3067\u3082\u3001\u30a2\u30d7\u30ea\u30b1\u30fc\u30b7\u30e7\u30f3\u30d5\u30a9\u30eb\u30c0\u3067\u3082\u3001 \u3069\u3053\u3067\u3082\u304b\u307e\u3044\u307e\u305b\u3093\u3002<\/p>\n\n\n\n \u30c1\u30e5\u30fc\u30c8\u30ea\u30a2\u30eb\u3067\u4f7f\u7528\u3059\u308b\u914d\u5217\u306f\u3001 Mycoplasma genitalium G37<\/a>\u3068 Mycoplasma pneumoniae M129<\/a>\u3068\u3057\u307e\u3059\u3002NCBI \u304b\u3089 Genbank \u5f62\u5f0f\u306e\u30d5\u30a1\u30a4\u30eb\u304c\u30c0\u30a6\u30f3\u30ed\u30fc\u30c9\u3067\u304d\u307e\u3059\u306e\u3067\u3001\u305d\u308c\u305e\u308cMy-genitalium.gbk\u3001 My-pneumoniae.gbk \u3068\u3044\u3046\u540d\u524d\u3068\u3057\u3066\u304a\u304d\u307e\u3059\u3002 \u5b9f\u969b\u306e\u30d5\u30a1\u30a4\u30eb\u540d\u306f\u7570\u306a\u3063\u3066\u3044\u3066\u3082\u3001\u8aad\u307f\u66ff\u3048\u3066\u3044\u305f\u3060\u3051\u308c\u3070OK\u3067\u3059\u3002<\/p>\n\n\n\n \u3055\u304d\u307b\u3069\u306e\u3075\u305f\u3064\u306e\u914d\u5217\u30d5\u30a1\u30a4\u30eb\u304c seq\/ \u306b\u3042\u308b\u3068\u3057\u3066\u3001\u91cd\u3055 15\u3001 \u9577\u3055 21 \u306e seed pattern \u3067 Murasaki \u3092\u5b9f\u884c\u3057\u307e\u3059\u3002<\/p>\n\n\n\n Seed pattern \u306f\u81ea\u5206\u3067 -p 11001111 \u306e\u3088\u3046\u306b\u6307\u5b9a\u3059\u308b\u3053\u3068\u3082\u3067\u304d\u307e\u3059\u3057\u3001 \u3053\u306e\u4f8b\u306e\u3088\u3046\u306b\u91cd\u3055\u3068\u9577\u3055\u3092\u6307\u5b9a\u3057\u3066\u30e9\u30f3\u30c0\u30e0\u306b\u751f\u6210\u3059\u308b\u3053\u3068\u3082\u3067\u304d\u307e\u3059\u3002 \u5b9f\u969b\u306b\u4f7f\u308f\u308c\u305f seed pattern \u306f\u3001\u5b9f\u884c\u958b\u59cb\u76f4\u5f8c\u306b\u3001<\/p>\n\n\n\n \u306e\u3088\u3046\u306b\u8868\u793a\u3055\u308c\u307e\u3059\u3002\u307e\u305f\u3001\u7d50\u679c\u306f output\/ \u4ee5\u4e0b\u306b\u3001 -n \u30aa\u30d7\u30b7\u30e7\u30f3\u3067\u6307\u5b9a\u3057\u305f\u30d5\u30a1\u30a4\u30eb\u540d\u306b\u66f8\u304d\u8fbc\u307e\u308c\u307e\u3059\u3002<\/p>\n\n\n\n \u30a2\u30f3\u30ab\u30fc\u306e\u8a08\u7b97\u306f\u3001<\/p>\n\n\n\n \u306e\u9806\u3067\u884c\u308f\u308c\u307e\u3059\u3002\u30cf\u30c3\u30b7\u30e5\u306e\u8a08\u7b97\u3068\u3044\u3046\u306e\u306f\u3001\u914d\u5217\u306b seed pattern \u3092\u5f53\u3066\u3066\u30b9\u30ad\u30e3\u30f3\u3057\u306a\u304c\u3089\u3001\u3069\u306e seed \u304c\u3069\u306e\u4f4d\u7f6e\u306b\u3042\u308b\u304b\u3001 \u306e\u4e00\u89a7\u3092\u3064\u304f\u308b\u4f5c\u696d\u3067\u3059\u3002\u4e0e\u3048\u3089\u308c\u305f\u914d\u5217\u3092\u4e21\u65b9\u5411\u304b\u3089\u30b9\u30ad\u30e3\u30f3\u3057\u3001 \u51fa\u73fe\u3059\u308b\u3059\u3079\u3066\u306e seed \u306e\u4e00\u89a7\u3092\u4f5c\u308a\u7d42\u308f\u3063\u305f\u3089\u3001 \u30a2\u30f3\u30ab\u30fc\u3092\u62bd\u51fa\u3057\u307e\u3059\u3002<\/p>\n\n\n\n \u6700\u7d42\u7684\u306b\u3001<\/p>\n\n\n\n \u306a\u3069\u3068\u8868\u793a\u3055\u308c\u3066\u8a08\u7b97\u304c\u7d42\u4e86\u3057\u307e\u3059\u3002\u3053\u3053\u3067\u3001 \u3082\u3046\u3059\u3053\u3057\u77ed\u304f\u3066\u8efd\u3044 seed pattern\u3001\u305f\u3068\u3048\u3070 12:18 \u3092\u4f7f\u3046\u3068\u3001<\/p>\n\n\n\n \u306e\u3088\u3046\u306b\u3001\u30a2\u30f3\u30ab\u30fc\u306e\u62bd\u51fa\u306b\u304b\u304b\u308b\u6642\u9593\u3082\u3001 \u62bd\u51fa\u3055\u308c\u308b\u30a2\u30f3\u30ab\u30fc\u306e\u6570\u3082\u3050\u3063\u3068\u591a\u304f\u306a\u308a\u307e\u3059\u3002 \u3042\u307e\u308a\u591a\u3059\u304e\u308b\u3068\u8a08\u7b97\u306b\u6642\u9593\u304c\u304b\u304b\u308a\u3059\u304e\u305f\u308a\u3059\u308b\u3053\u3068\u3082\u3042\u308a\u307e\u3059\u306e\u3067\u3001 \u6570\u5b57\u3092\u898b\u306a\u304c\u3089\u5c11\u3057\u9577\u3081\u306e seed pattern \u304b\u3089\u8a66\u3057\u3066\u307f\u308b\u306e\u304c\u3088\u3044\u3067\u3057\u3087\u3046\u3002 \u306a\u304a\u3001\u3053\u306e\u30c1\u30e5\u30fc\u30c8\u30ea\u30a2\u30eb\u3067\u306f 15:21 \u3084 12:18 \u306e\u3088\u3046\u306b\u6307\u5b9a\u3057\u3066\u3001 \u30e9\u30f3\u30c0\u30e0\u306a seed pattern \u3092\u4f7f\u3063\u3066\u3044\u308b\u306e\u3067\u3001 \u5b9f\u969b\u306b\u3084\u3063\u3066\u307f\u305f\u3089\u30a2\u30f3\u30ab\u30fc\u306e\u6b63\u78ba\u306a\u6570\u304c\u9055\u3046\u3001 \u3068\u3044\u3046\u3053\u3068\u3082\u3042\u308a\u307e\u3059\u304c\u3001\u30d0\u30b0\u3067\u306f\u3042\u308a\u307e\u305b\u3093\u3002<\/p>\n\n\n\n \u7d50\u679c\u306f\u3001\u3055\u304d\u307b\u3069\u306e\u8aac\u660e\u306e\u901a\u308a\u3001output\/ \u4ee5\u4e0b\u306b\u3001-n \u30aa\u30d7\u30b7\u30e7\u30f3\u3067\u6307\u5b9a\u3057\u305f\u30d5\u30a1\u30a4\u30eb\u540d\u3067\u66f8\u304d\u8fbc\u307e\u308c\u307e\u3059\u3002 \u3044\u304f\u3064\u304b\u306e\u30d5\u30a1\u30a4\u30eb\u304c\u751f\u6210\u3055\u308c\u307e\u3059\u304c\u3001 \u3044\u3061\u3070\u3093\u57fa\u672c\u7684\u306a\u3082\u306e\u306f .anchors \u30d5\u30a1\u30a4\u30eb (\u3053\u306e\u4f8b\u3060\u3068\u3001 output\/genitalium-pneumoniae.anchors) \u3067\u3059\u3002 \u3053\u306e\u30d5\u30a1\u30a4\u30eb\u306b\u306f\u3001\u4ee5\u4e0b\u306e\u3088\u3046\u306b\u30a2\u30f3\u30ab\u30fc\u306e\u4f4d\u7f6e\u304c\u8a18\u9332\u3055\u308c\u3066\u3044\u307e\u3059\u3002<\/p>\n\n\n\n \u3053\u308c\u306f\u3001My-genitalium.gbk \u306e 54-74bp \u304b\u3089 My-pneumoniae.gbk \u306e 770742-770762bp \u306e\u540c\u3058\u9396\u306b\u300168-89bp \u304b\u3089 88583-88562bp \u306e\u9006\u9396\u306b\u3001 69-90bp \u304b\u3089 23793-23872bp \u306e\u9006\u9396\u306b\u3001 \u305d\u308c\u305e\u308c\u30a2\u30f3\u30ab\u30fc\u304c\u5f15\u304b\u308c\u3066\u3044\u308b\u3068\u3044\u3046\u3053\u3068\u3092\u793a\u3057\u3066\u3044\u307e\u3059\u3002<\/p>\n\n\n\n \u307e\u305f\u3001\u305d\u308c\u305e\u308c\u306e\u30a2\u30f3\u30ab\u30fc\u306e tf-idf \u30b9\u30b3\u30a2\u306f\u3001.anchors.stats.tfidf \u30d5\u30a1\u30a4\u30eb\u306b\u3001<\/p>\n\n\n\n \u306e\u3088\u3046\u306b\u8a18\u9332\u3055\u308c\u3066\u3044\u307e\u3059\u3002 \u3055\u304d\u307b\u3069\u306e3\u3064\u306e\u30a2\u30f3\u30ab\u30fc\u304c\u3069\u308c\u3082\u540c\u3058 9.32821 \u306e\u30b9\u30b3\u30a2\u3092\u6301\u3063\u3066\u3044\u308b\u3053\u3068\u304c\u308f\u304b\u308a\u307e\u3059\u3002<\/p>\n\n\n\n \u305d\u306e\u307b\u304b\u3001\u3044\u304f\u3064\u304b\u306e\u30d5\u30a1\u30a4\u30eb\u304c\u751f\u6210\u3055\u308c\u307e\u3059\u304c\u3001 \u7279\u306b\u91cd\u8981\u306a\u3068\u3053\u308d\u3067\u306f\u3001 .options \u306b\u306f\u5b9f\u884c\u6642\u306b\u6307\u5b9a\u3057\u305f\u3044\u308d\u3044\u308d\u306e\u30d1\u30e9\u30e1\u30fc\u30bf\u3084\u5b9f\u969b\u306b\u4f7f\u308f\u308c\u305f seed pattern \u304c\u3001.seqs \u306b\u306f\u5bfe\u8c61\u306e\u914d\u5217\u30d5\u30a1\u30a4\u30eb\u306e\u540d\u524d\u304c\u3001 \u305d\u308c\u305e\u308c\u8a18\u9332\u3055\u308c\u3066\u3044\u307e\u3059\u3002\u5fc5\u8981\u306b\u5fdc\u3058\u3066\u53c2\u7167\u3057\u3066\u304f\u3060\u3055\u3044\u3002<\/p>\n\n\n\n GMV \u3092\u8d77\u52d5\u3057\u3001Murasaki \u306e\u51fa\u529b\u3057\u305f .anchors \u30d5\u30a1\u30a4\u30eb\u3092\u9078\u629e\u3059\u308b\u3068\u3001\u305d\u306e\u7d50\u679c\u3092\u30b0\u30e9\u30d5\u30a3\u30c3\u30af\u8868\u793a\u3059\u308b\u3053\u3068\u304c\u3067\u304d\u307e\u3059\u3002 \u30a2\u30f3\u30ab\u30fc\u304c\u591a\u3044\u5834\u5408\u3001 \u53f3\u56f3\u306e\u5de6\u5074\u306e\u3088\u3046\u306b\u306a\u3093\u3060\u304b\u308f\u304b\u3089\u306a\u304f\u306a\u3063\u3066\u3057\u307e\u3044\u307e\u3059\u304c\u3001 Inspector \u3092\u958b\u3044\u3066 tf-idf anchor filter \u306e\u4e0b\u9650\u5024\u3092\u5f15\u304d\u4e0a\u3052\u308b\u3068\u3001 \u53f3\u56f3\u306e\u53f3\u5074\u306e\u3088\u3046\u306b\u3001 \u30b2\u30ce\u30e0\u306e\u518d\u7de8\u6210\u306e\u69d8\u5b50\u304c\u898b\u3084\u3059\u304f\u306a\u308a\u307e\u3059\u3002<\/p>\n\n\n\n GMV \u3067\u306f\u3001\u4e00\u672c\u4e00\u672c\u306e\u7dda\u304c\u3072\u3068\u3064\u3072\u3068\u3064\u306e\u30a2\u30f3\u30ab\u30fc\u306b\u5bfe\u5fdc\u3057\u3066\u304a\u308a\u3001 \u4e00\u756a\u4e0a\u306b\u8868\u793a\u3055\u308c\u3066\u3044\u308b\u30b2\u30ce\u30e0\u4e0a\u3067\u306e\u4f4d\u7f6e\u3067\u7dda\u306e\u8272\u3092\u6c7a\u5b9a\u3057\u3066\u3044\u307e\u3059\u3002 \u3057\u305f\u304c\u3063\u3066\u3001\u4e0a\u304b\u30892\u672c\u76ee\u306e\u30b2\u30ce\u30e0\u3067\u7dda\u306e\u9593\u9694\u304c\u7a7a\u3044\u3066\u3044\u308c\u3070\u3001 \u305d\u3053\u306b\u306f\u633f\u5165\u3055\u308c\u305f\u914d\u5217\u304c\u3042\u308b\u3053\u3068\u3092\u610f\u5473\u3057\u3066\u3044\u307e\u3059\u3057\u3001 \u7dda\u304c\u4ea4\u5dee\u3057\u3066\u3044\u308c\u3070\u3001\u518d\u7de8\u6210\u304c\u8d77\u304d\u3066\u3044\u308b\u3053\u3068\u304c\u308f\u304b\u308a\u307e\u3059\u3002 \u4efb\u610f\u306e\u5834\u6240\u3092\u62e1\u5927\u3057\u305f\u308a\u3001\u30a2\u30f3\u30ab\u30fc\u3092\u305f\u3069\u3063\u305f\u308a\u3001 \u305d\u306e\u5834\u6240\u306e\u30a2\u30ce\u30c6\u30fc\u30b7\u30e7\u30f3\u3092\u53c2\u7167\u3057\u305f\u308a\u3068\u3001 \u30b2\u30ce\u30e0\u30d6\u30e9\u30a6\u30b6\u7684\u306a\u4f7f\u3044\u65b9\u3092\u3059\u308b\u3053\u3068\u3082\u3067\u304d\u307e\u3059\u3002<\/p>\n\n\n\n GMV \u306f\u305f\u3044\u3078\u3093\u591a\u6a5f\u80fd\u3067\u3059\u306e\u3067\u3001 \u307e\u305f\u5225\u306e\u6a5f\u4f1a\u306b\u7d39\u4ecb\u8a18\u4e8b\u3092\u66f8\u304f\u3053\u3068\u306b\u3057\u307e\u3059\u3002<\/p>\n\n\n\n \u3082\u3061\u308d\u3093\u3067\u3059\u3002Murasaki \u3067\u306f\u305f\u304f\u3055\u3093\u306e\u914d\u5217\u3092\u4e0e\u3048\u305f\u5834\u5408\u3067\u3082\u3001 progressive \u306b\u3067\u306f\u306a\u304f\u4e00\u6c17\u306b\u30a2\u30e9\u30a4\u30e1\u30f3\u30c8\u3057\u3066\u3001 \u3059\u3079\u3066\u306e\u914d\u5217\u306b\u5171\u901a\u306b\u4fdd\u5b58\u3055\u308c\u3066\u3044\u308b\u90e8\u5206\u914d\u5217\u3092\u63a2\u3057\u307e\u3059\u3002 \u30ea\u30d4\u30fc\u30c8\u914d\u5217\u306a\u3069\u304c\u3042\u3063\u305f\u5834\u5408\u3067\u3082\u3001mergefilter \u3092\u9069\u5207\u306b\u9069\u7528\u3059\u308b\u3053\u3068\u3067\u3001\u8a08\u7b97\u306e\u6240\u8981\u6642\u9593\u304c\u7a81\u7136\u7206\u767a\u3059\u308b\u3053\u3068\u3092\u9632\u304e\u3001 \u9ad8\u901f\u306a\u51e6\u7406\u3092\u5b9f\u73fe\u3057\u3066\u3044\u307e\u3059\u3002<\/p>\n\n\n\n \u307e\u305f\u3001”Rift” \u3068\u547c\u3070\u308c\u308b\u30aa\u30d7\u30b7\u30e7\u30f3\u3067\u3001 \u3044\u304f\u3064\u304b\u306e\u914d\u5217\u306b\u306f\u542b\u307e\u308c\u3066\u3044\u306a\u3044\u90e8\u5206\u914d\u5217\u3092\u3001 \u8a08\u7b97\u7d50\u679c\u306e\u30a2\u30f3\u30ab\u30fc\u306b\u542b\u3081\u308b\u3053\u3068\u3082\u53ef\u80fd\u3067\u3059\u3002<\/p>\n\n\n\n \u57fa\u672c\u7684\u306b\u306f GenBank \u5f62\u5f0f\u3068\u3001FASTA \u5f62\u5f0f\u3092\u6271\u3046\u3053\u3068\u304c\u3067\u304d\u307e\u3059\u3002 FASTA \u5f62\u5f0f\u306e\u5834\u5408\u306b\u306f\u3001\u67d3\u8272\u4f53\u3084 contig \u306a\u3069\u3001 \u8907\u6570\u306e\u914d\u5217\u3092\u3072\u3068\u3064\u306e\u30d5\u30a1\u30a4\u30eb\u306b\u307e\u3068\u3081\u3066\u304a\u304d\u3001 \u3072\u3068\u3064\u306e\u9577\u3044\u914d\u5217\u3068\u3057\u3066\u6271\u3046\u3053\u3068\u304c\u3067\u304d\u307e\u3059\u3002\u3053\u306e\u5834\u5408\u3001 \u914d\u5217\u3068\u914d\u5217\u306e\u9593\u306b\u306f 10bp \u306e\u30ae\u30e3\u30c3\u30d7\u304c\u633f\u5165\u3055\u308c\u3001 \u914d\u5217\u306e\u9593\u3092\u307e\u305f\u3050\u30a2\u30f3\u30ab\u30fc\u304c\u751f\u6210\u3055\u308c\u308b\u3053\u3068\u306f\u3042\u308a\u307e\u305b\u3093\u3002<\/p>\n\n\n\n Murasaki \u306f EcoHash \u3068\u3044\u3046\u304d\u308f\u3081\u3066\u7701\u30e1\u30e2\u30ea\u306a\u72ec\u81ea\u306e\u30c7\u30fc\u30bf\u69cb\u9020\u3092\u63a1\u7528\u3057\u3066\u304a\u308a\u3001 \u5177\u4f53\u7684\u306b 1bp \u3042\u305f\u308a\u4f55\u30d0\u30a4\u30c8\u306e\u30e1\u30e2\u30ea\u304c\u5fc5\u8981\u3001 \u3068\u3044\u3046\u3053\u3068\u3092\u8a08\u7b97\u3059\u308b\u3053\u3068\u306f\u3067\u304d\u307e\u305b\u3093\u304c\u3001 \u5927\u8178\u83cc\u304f\u3089\u3044\u306e\u30b5\u30a4\u30ba\u306e\u30b2\u30ce\u30e0\u30922\u7a2e\u985e\u6bd4\u8f03\u3059\u308b\u306a\u3089\u3001 2GB \u7a0b\u5ea6\u306e\u30e1\u30e2\u30ea\u3067\u5145\u5206\u3067\u3059\u3002\u6700\u8fd1\u306e\u30b3\u30f3\u30d4\u30e5\u30fc\u30bf\u306f\u305f\u3044\u3066\u3044 8GB \u4ee5\u4e0a\u306e\u30e1\u30e2\u30ea\u304c\u3042\u308a\u307e\u3059\u3057\u3001 \u6570\u7a2e\u985e\u7a0b\u5ea6\u306e\u5fae\u751f\u7269\u30b2\u30ce\u30e0\u306a\u3089\u3070\u554f\u984c\u306a\u304f\u6271\u3046\u3053\u3068\u304c\u3067\u304d\u307e\u3059\u3002<\/p>\n\n\n\n \u307e\u305f\u3001Hash bits \u3068\u547c\u3070\u308c\u308b\u30d1\u30e9\u30e1\u30fc\u30bf (-b \u30aa\u30d7\u30b7\u30e7\u30f3) \u306e\u6570\u5b57\u3092\u5c0f\u3055\u3081\u306b\u8abf\u6574\u3059\u308b\u3053\u3068\u3067\u3001 \u5c11\u306a\u3044\u30e1\u30e2\u30ea\u3067\u3082\u8a08\u7b97\u304c\u53ef\u80fd\u306b\u306a\u308b\u3053\u3068\u304c\u3042\u308a\u307e\u3059\u3002 \u3053\u306e\u5024\u306f\u901a\u5e38\u3001\u7a7a\u304d\u30e1\u30e2\u30ea\u306e\u30b5\u30a4\u30ba\u304b\u3089\u81ea\u52d5\u7684\u306b\u8a08\u7b97\u3055\u308c\u307e\u3059\u304c\u3001 \u30b7\u30b9\u30c6\u30e0\u306e\u72b6\u6cc1\u306b\u3088\u3063\u3066\u306f\u5b9f\u969b\u306b\u78ba\u4fdd\u53ef\u80fd\u306a\u30e1\u30e2\u30ea\u3088\u308a\u5927\u304d\u304f\u306a\u3063\u3066\u3057\u307e\u3046\u3053\u3068\u304c\u3042\u308a\u307e\u3059\u3002\u4f7f\u7528\u3055\u308c\u305f hash bits \u306e\u5024\u306f .options \u30d5\u30a1\u30a4\u30eb\u306b<\/p>\n\n\n\n \u306e\u3088\u3046\u306b\u8a18\u9332\u3055\u308c\u3066\u3044\u307e\u3059\u3002\u3053\u308c\u3092\u5c0f\u3055\u304f\u3059\u308b\u3068\u3001 \u3088\u308a\u5c11\u306a\u3044\u30e1\u30e2\u30ea\u3067\u306e\u8a08\u7b97\u304c\u53ef\u80fd\u3067\u3059\u304c\u3001\u8a08\u7b97\u306b\u306f\u3088\u308a\u6642\u9593\u304c\u304b\u304b\u308a\u307e\u3059\u3002 \u3057\u304b\u3057\u3001\u5927\u304d\u3059\u304e\u308b\u5834\u5408\u306b\u306f\u3001\u4eee\u60f3\u30e1\u30e2\u30ea\u306e\u30b9\u30ef\u30c3\u30d7\u304c\u767a\u751f\u3057\u3001 \u8a08\u7b97\u304c\u7d42\u308f\u3089\u306a\u304f\u306a\u308b\u5834\u5408\u304c\u3042\u308a\u307e\u3059\u3002<\/p>\n\n\n\n \u3053\u308c\u306f\u96e3\u3057\u3044\u8cea\u554f\u3067\u3059\u304c\u3001\u5927\u8178\u83cc\u306a\u3069\u5c0f\u3055\u306a\u30b2\u30ce\u30e0\u306e\u5834\u5408\u306b\u306f 15\u301c30bp \u304f\u3089\u3044\u306e\u9577\u3055\u3001\u30d2\u30c8\u306a\u3069\u5927\u304d\u306a\u30b2\u30ce\u30e0\u3067\u306f 100bp \u4ee5\u4e0a\u306e\u9577\u3055\u3092\u6307\u5b9a\u3059\u308b\u3053\u3068\u3082\u3042\u308a\u307e\u3059\u3002<\/p>\n\n\n\n \u3082\u3061\u308d\u3093\u3001 \u7279\u5b9a\u306e\u30c9\u30e1\u30a4\u30f3\u914d\u5217\u306e\u9577\u3055\u306a\u3069\u306b\u5408\u308f\u305b\u3066 seed pattern \u3092\u7d30\u304b\u304f\u6c7a\u3081\u305f\u3044\u3001\u3068\u3044\u3046\u3053\u3068\u3082\u3042\u308b\u304b\u3082\u3057\u308c\u307e\u305b\u3093\u304c\u3001 \u57fa\u672c\u7684\u306b\u306f\u4f55\u5ea6\u304b Murasaki \u3092\u8d70\u3089\u305b\u306a\u304c\u3089\u3001try & error \u3067\u9577\u3055\u3068\u91cd\u3055\u3092\u6c7a\u3081\u3066\u3044\u304f\u306e\u304c\u3088\u3044\u3068\u601d\u3044\u307e\u3059\u3002<\/p>\n\n\n\n \u57fa\u672c\u7684\u306b\u306f gcc \u3068 Boost C++ Library \u304c\u3042\u308c\u3070\u52d5\u4f5c\u3057\u307e\u3059\u3002 LLVM Clang \u306e C++ \u30b3\u30f3\u30d1\u30a4\u30e9\u3067\u306f\u30b3\u30f3\u30d1\u30a4\u30eb\u3067\u304d\u307e\u305b\u3093\u3002 \u3053\u308c\u306f\u3001Murasaki \u306b\u542b\u307e\u308c\u3066\u3044\u308b\u3001Interval Tree \u3068\u3044\u3046\u30c7\u30fc\u30bf\u69cb\u9020\u306e\u5b9f\u88c5\u304c\u5f37\u304f GNU \u306e STL \u5b9f\u88c5\u306b\u4f9d\u5b58\u3057\u3066\u3044\u308b\u305f\u3081\u3067\u3001 \u6b8b\u5ff5\u306a\u304c\u3089\u3044\u307e\u306e\u3068\u3053\u308d\u89e3\u6c7a\u306e\u4e88\u5b9a\u306f\u3042\u308a\u307e\u305b\u3093\u3002<\/p>\n\n\n\n OpenMPI \u306a\u3069\u304c\u3042\u308c\u3070 MPI \u306b\u3088\u308b\u4e26\u5217\u5316\u306b\u5bfe\u5fdc\u3057\u3066\u3044\u307e\u3059\u3002 MIT-shmem \u304c\u3042\u308c\u3070 (\u6700\u8fd1\u306e Unix \u7cfb\u306e OS \u3067\u306f\u307b\u3068\u3093\u3069\u52d5\u304f\u306f\u305a) \u3001\u30ce\u30fc\u30c9\u5185\u3067\u306e\u4e26\u5217\u5316\u3082\u53ef\u80fd\u3067\u3059\u3002<\/p>\n\n\n\n \u4e26\u5217\u5316\u3057\u305f\u5834\u5408\u306b\u306f\u5404\u30ce\u30fc\u30c9\u306e\u30e1\u30e2\u30ea\u3092\u96c6\u3081\u3066\u4f7f\u3046\u3053\u3068\u3082\u3067\u304d\u308b\u306e\u3067\u3001 \u5927\u898f\u6a21\u306a\u89e3\u6790\u3092\u5b9f\u884c\u3059\u308b\u5834\u5408\u306b\u306f\u5fc5\u9808\u3067\u3059\u3002<\/p>\n","protected":false},"excerpt":{"rendered":" Murasaki \u3068\u306f Murasaki \u306f \u591a\u7a2e\u9593\u306e\u30b2\u30ce\u30e0\u5168\u4f53\u3092\u9ad8\u901f\u306b\u30a2\u30e9\u30a4\u30e1\u30f3\u30c8\u3059\u308b\u3053\u3068\u306e\u3067\u304d\u308b\u30c4\u30fc\u30eb\u3067\u3001 \u3044\u304f\u3064\u304b\u306e\u65b0\u3057\u3044\u30a2\u30a4\u30c7\u30a2\u3092\u5c0e\u5165\u3059\u308b\u3053\u3068\u306b\u3088\u308a\u3001 \u30b2\u30ce\u30e0\u518d\u7de8\u6210\u306e\u5168\u8c8c\u3092\u9ad8\u901f\u306b\u6349\u3048\u3064\u3064\u3082\u3001 \u30b2\u30ce\u30e0\u9593\u306e … “Murasaki \u30c1\u30e5\u30fc\u30c8\u30ea\u30a2\u30eb” \u306e<\/span>\u7d9a\u304d\u3092\u8aad\u3080<\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-140","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/kuma.osana-lab.org\/index.php\/wp-json\/wp\/v2\/pages\/140","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/kuma.osana-lab.org\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/kuma.osana-lab.org\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/kuma.osana-lab.org\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/kuma.osana-lab.org\/index.php\/wp-json\/wp\/v2\/comments?post=140"}],"version-history":[{"count":1,"href":"https:\/\/kuma.osana-lab.org\/index.php\/wp-json\/wp\/v2\/pages\/140\/revisions"}],"predecessor-version":[{"id":141,"href":"https:\/\/kuma.osana-lab.org\/index.php\/wp-json\/wp\/v2\/pages\/140\/revisions\/141"}],"wp:attachment":[{"href":"https:\/\/kuma.osana-lab.org\/index.php\/wp-json\/wp\/v2\/media?parent=140"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}Murasaki \u306e\u30a2\u30a4\u30c7\u30a2<\/h2>\n\n\n\n
\u30b2\u30ce\u30e0\u518d\u7de8\u6210<\/h3>\n\n\n\n
![\"Genome](\"https:\/\/lut.eee.u-ryukyu.ac.jp\/docs\/murasaki\/genome-rearrangement.png\")
<\/figure>\n\n\n\n\u30b9\u30da\u30fc\u30b9\u5165\u308a\u30b7\u30fc\u30c9\u30d1\u30bf\u30fc\u30f3 (Spaced Seed Pattern)<\/h3>\n\n\n\n
![\"Spaced](\"https:\/\/lut.eee.u-ryukyu.ac.jp\/docs\/murasaki\/seed-pattern.png\")
<\/figure>\n\n\n\n\u30b7\u30fc\u30c9\u3068\u30a2\u30f3\u30ab\u30fc<\/h3>\n\n\n\n
![\"Seed](\"https:\/\/lut.eee.u-ryukyu.ac.jp\/docs\/murasaki\/seed-to-anchor.png\")
<\/figure>\n\n\n\ntf-idf \u30b9\u30b3\u30a2<\/h3>\n\n\n\n
![\"tf-idf](\"https:\/\/lut.eee.u-ryukyu.ac.jp\/docs\/murasaki\/tf-idf.png\")
<\/figure>\n\n\n\n\u30ea\u30d4\u30fc\u30c8\u8010\u6027: mergefilter<\/h3>\n\n\n\n
\u57fa\u672c\u7684\u306a\u4f7f\u3044\u65b9<\/h2>\n\n\n\n
\u30bd\u30d5\u30c8\u30a6\u30a7\u30a2\u3068\u914d\u5217\u3092\u624b\u306b\u5165\u308c\u308b<\/h3>\n\n\n\n
Murasaki \u3092\u5b9f\u884c\u3059\u308b<\/h3>\n\n\n\n
% ~\/bin\/murasaki -p 15:21 -n genitalium-pneumoniae seq\/My-genitalium.gbk seq\/My-pneumoniae.gbk<\/pre>\n\n\n\n
Writing to: output\/genitalium-pneumoniae\nPattern is: 101001110111111111001<\/pre>\n\n\n\n
\n
Anchor extraction completed in: 2.765 seconds\nTotal anchors: 11251<\/pre>\n\n\n\n
Anchor extraction completed in: 16.381 seconds\nTotal anchors: 414680<\/pre>\n\n\n\n
\u7d50\u679c\u306e\u30d5\u30a1\u30a4\u30eb<\/h3>\n\n\n\n
54 74 + 770742 770762 +\n68 89 + -88583 -88562 -\n69 90 + -23793 -23772 -<\/pre>\n\n\n\n
9.32821\n9.32821\n9.32821<\/pre>\n\n\n\n
GMV \u3067\u7d50\u679c\u3092\u898b\u308b<\/h3>\n\n\n\n
![\"Seed](\"https:\/\/lut.eee.u-ryukyu.ac.jp\/docs\/murasaki\/gmv.png\")
<\/figure>\n\n\n\nFAQ<\/h2>\n\n\n\n
3\u672c\u4ee5\u4e0a\u306e\u914d\u5217\u3092\u30a2\u30e9\u30a4\u30e1\u30f3\u30c8\u3067\u304d\u307e\u3059\u304b?<\/h3>\n\n\n\n
\u4f7f\u3048\u308b\u914d\u5217\u30d5\u30a1\u30a4\u30eb\u306f\u306a\u3093\u3067\u3059\u304b?<\/h3>\n\n\n\n
\u5fc5\u8981\u306a\u30e1\u30e2\u30ea\u306f\u3069\u306e\u304f\u3089\u3044\u3067\u3057\u3087\u3046\u304b?<\/h3>\n\n\n\n
Max usable hash bits: 27<\/pre>\n\n\n\n
Seed pattern \u306f\u3069\u306e\u3088\u3046\u306b\u6c7a\u3081\u305f\u3089\u3088\u3044\u3067\u3057\u3087\u3046\u304b<\/h3>\n\n\n\n
Murasaki \u3092\u81ea\u5206\u306e\u30b7\u30b9\u30c6\u30e0\u3067\u30b3\u30f3\u30d1\u30a4\u30eb\u3057\u305f\u3044\u306e\u3067\u3059\u304c<\/h3>\n\n\n\n
Murasaki \u306f\u4e26\u5217\u30b7\u30b9\u30c6\u30e0\u3067\u52d5\u4f5c\u3057\u307e\u3059\u304b?<\/h3>\n\n\n\n